SNP Profiles of IMC 96 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
1._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
2._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
3._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
4._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
5._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
6._IMC_96	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
7._GC-08-255-8-23	CC	AA	CG	TT	TT	AA	TT	GT	CC	CC	AA	GG	CC	GG
8._IMC_96	CC	AG	CG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CT	AA
9._IMC_96	CC	AG	CG	TT	CT	CC	TT	TT	CC	CC	AA	GG	CT	AA
10._IMC_96	CT	AG	GG	CT	TT	AA	TT	TT	CC	CT	AA	AA	CT	AA
11._GC-08-255-8-23	CT	AG	GG	CT	TT	AA	TT	TT	CC	CT	AA	AA	CT	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CT	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC
1._IMC_96	TT	AA	GG	CT	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC
2._IMC_96	TT	AA	GG	CT	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC
3._GC-08-255-8-23	TT	AA	GG	CT	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC
4._GC-08-255-8-23	TT	AA	GG	CT	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC
5._GC-08-255-8-23	TT	AA	GG	CT	CT	CC	GG	AA	CC	AA	GG	GG	CT	CC
6._IMC_96	TT	AA	GG	CT	_	CC	GG	AA	CC	AA	GG	GG	CT	CC
7._GC-08-255-8-23	TT	AA	GG	CT	_	CC	GG	AA	CC	AA	GG	GG	CT	CC
8._IMC_96	TT	AA	GG	CC	CT	CC	GG	AA	CC	_	GG	GT	CT	CC
9._IMC_96	TT	AA	GG	CC	CT	CC	GG	AA	CC	_	GG	GT	CT	CC
10._IMC_96	CT	AA	CG	CC	CC	GG	GG	AA	CT	AA	CC	GT	CC	AC
11._GC-08-255-8-23	CT	AA	CG	CC	CC	GG	GG	AA	CT	AA	CC	GT	CC	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X
1._IMC_96	AA	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X
2._IMC_96	AA	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X
3._GC-08-255-8-23	AA	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X
4._GC-08-255-8-23	AA	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X
5._GC-08-255-8-23	AA	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X
6._IMC_96	AA	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X
7._GC-08-255-8-23	AA	GG	AA	CC	AG	CG	AA	CC	GG	AC	AT	GG	X_X	X_X
8._IMC_96	AA	GG	AA	CT	AG	_	AC	CC	GT	CC	TT	GG	X_X	X_X
9._IMC_96	AA	GG	AA	CT	AG	_	AC	CC	GT	CC	TT	GG	X_X	X_X
10._IMC_96	AA	GG	AA	CT	AA	CC	AA	CC	GT	CC	AT	GG	X_X	X_X
11._GC-08-255-8-23	AA	GG	AA	CT	AA	CC	AA	CC	GT	CC	AT	GG	X_X	X_X

Input profile: IMC_96

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Mars Center for Cocoa Science, Brazil

Location: 8823 6

Dapeng Zhang, 2016

1._IMC_96

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8823 5

Dapeng Zhang, 2016

2._IMC_96

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8823 2

Dapeng Zhang, 2016

3._IMC_96 GC-08-255-8-23

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

4._IMC_96 GC-08-255-8-23

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._IMC_96 GC-08-255-8-23

identical
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._IMC_96

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8823 1

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

7._IMC_96 GC-08-255-8-23

identical
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

8._IMC_96

80.3 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B A46 T2

Dapeng Zhang, 2016

9._IMC_96

80.3 %
38 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: MARPER D562

Dapeng Zhang, 2016

10._IMC_96

65 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8823 4

Dapeng Zhang, 2016

11._IMC_96 GC-08-255-8-23

65 %
40 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25